-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_23/scaffold_23_2774258-2941164

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.90193_t
Valid prediction for GlimmerHMM_glimmerT_51929-T1
Valid prediction for snap_scaffold_23-snap.529-T1
Valid prediction for GlimmerHMM_glimmerT_51920-T1
Valid prediction for GlimmerHMM_glimmerT_51923-T1
Valid prediction for GeneMark_model.90173_t
Valid prediction for snap_scaffold_23-snap.554-T1
Valid prediction for Augustus_model.g34900.t1
Valid prediction for snap_scaffold_23-snap.537-T1
Valid prediction for snap_scaffold_23-snap.527-T1
Valid prediction for GlimmerHMM_glimmerT_51907-T1
Valid prediction for Augustus_model.g34884.t1
Valid prediction for GeneMark_model.90188_t
Valid prediction for Augustus_model.g34904.t1
Valid prediction for snap_scaffold_23-snap.523-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_51927-T1
Valid prediction for snap_scaffold_23-snap.553-T1
Valid prediction for snap_scaffold_23-snap.536-T1
Valid prediction for GlimmerHMM_glimmerT_51917-T1
Valid prediction for GeneMark_model.90190_t
Valid prediction for snap_scaffold_23-snap.541-T1
Valid prediction for Augustus_model.g34893.t1
Valid prediction for snap_scaffold_23-snap.546-T1
Valid prediction for GlimmerHMM_glimmerT_51905-T1
Valid prediction for snap_scaffold_23-snap.545-T1
Valid prediction for snap_scaffold_23-snap.550-T1
Valid prediction for snap_scaffold_23-snap.538-T1
Valid prediction for snap_scaffold_23-snap.524-T1
Valid prediction for GeneMark_model.90169_t
Valid prediction for GlimmerHMM_glimmerT_51918-T1
Valid prediction for snap_scaffold_23-snap.552-T1
Valid prediction for snap_scaffold_23-snap.551-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for Augustus_model.g34903.t1
Valid prediction for GeneMark_model.90168_t
Valid prediction for snap_scaffold_23-snap.532-T1
Valid prediction for GeneMark_model.90178_t
Valid prediction for Augustus_model.g34896.t1
Valid prediction for Augustus_model.g34889.t1
Valid prediction for GeneMark_model.90195_t
Valid prediction for GeneMark_model.90172_t
Valid prediction for GlimmerHMM_glimmerT_51921-T1
Valid prediction for Augustus_model.g34898.t1
Valid prediction for Augustus_model.g34895.t1
Valid prediction for GeneMark_model.90170_t
Valid prediction for snap_scaffold_23-snap.542-T1
Valid prediction for GlimmerHMM_glimmerT_51911-T1
Valid prediction for GeneMark_model.90175_t
Valid prediction for Augustus_model.g34892.t1
Valid prediction for snap_scaffold_23-snap.519-T1
Valid prediction for Augustus_model.g34888.t1
Valid prediction for snap_scaffold_23-snap.539-T1
Valid prediction for GlimmerHMM_glimmerT_51916-T1
Valid prediction for snap_scaffold_23-snap.535-T1
Valid prediction for GlimmerHMM_glimmerT_51925-T1
Valid prediction for Augustus_model.g34899.t1
Valid prediction for snap_scaffold_23-snap.531-T1
Valid prediction for snap_scaffold_23-snap.518-T1
Valid prediction for snap_scaffold_23-snap.549-T1
Valid prediction for snap_scaffold_23-snap.547-T1
Valid prediction for GlimmerHMM_glimmerT_51930-T1
Valid prediction for snap_scaffold_23-snap.543-T1
Valid prediction for snap_scaffold_23-snap.533-T1
Valid prediction for snap_scaffold_23-snap.548-T1
Valid prediction for GeneMark_model.90180_t
Valid prediction for Augustus_model.g34902.t1
Valid prediction for GeneMark_model.90184_t
Valid prediction for GeneMark_model.90185_t
Valid prediction for snap_scaffold_23-snap.528-T1
Valid prediction for GeneMark_model.90191_t
Valid prediction for GeneMark_model.90183_t
Valid prediction for snap_scaffold_23-snap.534-T1
Valid prediction for snap_scaffold_23-snap.556-T1
Valid prediction for GeneMark_model.90176_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_23-snap.517-T1
Valid prediction for GlimmerHMM_glimmerT_51914-T1
Valid prediction for Augustus_model.g34901.t1
Valid prediction for GeneMark_model.90165_t
Valid prediction for GlimmerHMM_glimmerT_51913-T1
Valid prediction for GeneMark_model.90166_t
Valid prediction for GlimmerHMM_glimmerT_51904-T1
Valid prediction for snap_scaffold_23-snap.555-T1
Valid prediction for GlimmerHMM_glimmerT_51924-T1
Valid prediction for GeneMark_model.90189_t
Valid prediction for GeneMark_model.90164_t
Valid prediction for Augustus_model.g34883.t1
Valid prediction for snap_scaffold_23-snap.521-T1
Valid prediction for snap_scaffold_23-snap.540-T1
Valid prediction for GlimmerHMM_glimmerT_51906-T1
Valid prediction for Augustus_model.g34891.t1
Valid prediction for Augustus_model.g34886.t1
Valid prediction for GlimmerHMM_glimmerT_51915-T1
Valid prediction for Augustus_model.g34887.t1
Valid prediction for GlimmerHMM_glimmerT_51926-T1
Valid prediction for GlimmerHMM_glimmerT_51912-T1
Valid prediction for Augustus_model.g34890.t1
Valid prediction for snap_scaffold_23-snap.525-T1
Valid prediction for GeneMark_model.90179_t
Valid prediction for GeneMark_model.90192_t
Valid prediction for snap_scaffold_23-snap.522-T1
Valid prediction for GeneMark_model.90194_t
Valid prediction for GlimmerHMM_glimmerT_51922-T1
Valid prediction for GlimmerHMM_glimmerT_51928-T1
Valid prediction for Augustus_model.g34897.t1
Valid prediction for snap_scaffold_23-snap.526-T1
Valid prediction for GlimmerHMM_glimmerT_51919-T1
Valid prediction for GeneMark_model.90187_t
Valid prediction for GeneMark_model.90171_t
Valid prediction for GlimmerHMM_glimmerT_51910-T1
Valid prediction for snap_scaffold_23-snap.520-T1
Valid prediction for GeneMark_model.90177_t
Valid prediction for Augustus_model.g34894.t1
Valid prediction for Augustus_model.g34885.t1
Valid prediction for GeneMark_model.90186_t
Valid prediction for GlimmerHMM_glimmerT_51908-T1
Valid prediction for GlimmerHMM_glimmerT_51909-T1
Valid prediction for GeneMark_model.90167_t
Valid prediction for snap_scaffold_23-snap.530-T1
Valid prediction for snap_scaffold_23-snap.544-T1
Valid prediction for GeneMark_model.90182_t
Valid prediction for GeneMark_model.90181_t
Valid prediction for GeneMark_model.90174_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 160870, rend_intergenic: 157097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 166907
-exon list size: 460


building trellis

0.2    
0.4    
0.6    
0.9    
1.1    
1.3    
1.5    
1.7    
1.9    
2.2    
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2.6    
2.8    
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3.7    
3.9    
4.1    
4.3    
4.5    
4.8    
5.0    
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5.4    
5.6    
5.8    
6.1    
6.3    
6.5    
6.7    
6.9    
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7.6    
7.8    
8.0    
8.2    
8.4    
8.7    
8.9    
9.1    
9.3    
9.5    
9.7    
10.0    
10.2    
10.4    
10.6    
10.8    
11.0    
11.3    
11.5    
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11.9    
12.1    
12.3    
12.6    
12.8    
13.0    
13.2    
13.4    
13.6    
13.9    
14.1    
14.3    
14.5    
14.7    
14.9    
15.2    
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15.6    
15.8    
16.0    
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16.9    
17.1    
17.3    
17.5    
17.7    
18.0    
18.2    
18.4    
18.6    
18.8    
19.0    
19.3    
19.5    
19.7    
19.9    
20.1    
20.3    
20.6    
20.8    
21.0    
21.2    
21.4    
21.6    
21.9    
22.1    
22.3    
22.5    
22.7    
22.9    
23.2    
23.4    
23.6    
23.8    
24.0    
24.2    
24.5    
24.7    
24.9    
25.1    
25.3    
25.5    
25.8    
26.0    
26.2    
26.4    
26.6    
26.8    
27.1    
27.3    
27.5    
27.7    
27.9    
28.1    
28.4    
28.6    
28.8    
29.0    
29.2    
29.4    
29.7    
29.9    
30.1    
30.3    
30.5    
30.7    
31.0    
31.2    
31.4    
31.6    
31.8    
32.0    
32.3    
32.5    
32.7    
32.9    
33.1    
33.3    
33.5    
33.8    
34.0    
34.2    
34.4    
34.6    
34.8    
35.1    
35.3    
35.5    
35.7    
35.9    
36.1    
36.4    
36.6    
36.8    
37.0    
37.2    
37.4    
37.7    
37.9    
38.1    
38.3    
38.5    
38.7    
39.0    
39.2    
39.4    
39.6    
39.8    
40.0    
40.3    
40.5    
40.7    
40.9    
41.1    
41.3    
41.6    
41.8    
42.0    
42.2    
42.4    
42.6    
42.9    
43.1    
43.3    
43.5    
43.7    
43.9    
44.2    
44.4    
44.6    
44.8    
45.0    
45.2    
45.5    
45.7    
45.9    
46.1    
46.3    
46.5    
46.8    
47.0    
47.2    
47.4    
47.6    
47.8    
48.1    
48.3    
48.5    
48.7    
48.9    
49.1    
49.4    
49.6    
49.8    
50.0    
50.2    
50.4    
50.6    
50.9    
51.1    
51.3    
51.5    
51.7    
51.9    
52.2    
52.4    
52.6    
52.8    
53.0    
53.2    
53.5    
53.7    
53.9    
54.1    
54.3    
54.5    
54.8    
55.0    
55.2    
55.4    
55.6    
55.8    
56.1    
56.3    
56.5    
56.7    
56.9    
57.1    
57.4    
57.6    
57.8    
58.0    
58.2    
58.4    
58.7    
58.9    
59.1    
59.3    
59.5    
59.7    
60.0    
60.2    
60.4    
60.6    
60.8    
61.0    
61.3    
61.5    
61.7    
61.9    
62.1    
62.3    
62.6    
62.8    
63.0    
63.2    
63.4    
63.6    
63.9    
64.1    
64.3    
64.5    
64.7    
64.9    
65.2    
65.4    
65.6    
65.8    
66.0    
66.2    
66.5    
66.7    
66.9    
67.1    
67.3    
67.5    
67.7    
68.0    
68.2    
68.4    
68.6    
68.8    
69.0    
69.3    
69.5    
69.7    
69.9    
70.1    
70.3    
70.6    
70.8    
71.0    
71.2    
71.4    
71.6    
71.9    
72.1    
72.3    
72.5    
72.7    
72.9    
73.2    
73.4    
73.6    
73.8    
74.0    
74.2    
74.5    
74.7    
74.9    
75.1    
75.3    
75.5    
75.8    
76.0    
76.2    
76.4    
76.6    
76.8    
77.1    
77.3    
77.5    
77.7    
77.9    
78.1    
78.4    
78.6    
78.8    
79.0    
79.2    
79.4    
79.7    
79.9    
80.1    
80.3    
80.5    
80.7    
81.0    
81.2    
81.4    
81.6    
81.8    
82.0    
82.3    
82.5    
82.7    
82.9    
83.1    
83.3    
83.5    
83.8    
84.0    
84.2    
84.4    
84.6    
84.8    
85.1    
85.3    
85.5    
85.7    
85.9    
86.1    
86.4    
86.6    
86.8    
87.0    
87.2    
87.4    
87.7    
87.9    
88.1    
88.3    
88.5    
88.7    
89.0    
89.2    
89.4    
89.6    
89.8    
90.0    
90.3    
90.5    
90.7    
90.9    
91.1    
91.3    
91.6    
91.8    
92.0    
92.2    
92.4    
92.6    
92.9    
93.1    
93.3    
93.5    
93.7    
93.9    
94.2    
94.4    
94.6    
94.8    
95.0    
95.2    
95.5    
95.7    
95.9    
96.1    
96.3    
96.5    
96.8    
97.0    
97.2    
97.4    
97.6    
97.8    
98.1    
98.3    
98.5    
98.7    
98.9    
99.1    
99.4    
99.6    
99.8    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 160870, rend_intergenic: 157097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 22 predictions persist after filtering for low support