-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2299

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63063-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63063-T1 757-916-terminal-1 is invalid.
Couldn't classify 42, 93
Couldn't classify 757, 912
Sorry, prediction GeneMark_model.110219_t fails validation.
(TCG)	 AG	42-93	GT	CGG
(GTG)	 AG	757-912	GT	AGG
-recovered GeneMark_model.110219_t, internal, 42, 93
-recovered GeneMark_model.110219_t, internal, 757, 912
Couldn't classify 1, 58
Sorry, prediction Augustus_model.g42027.t1 fails validation.
(GCC)	 GT	1-58	GT	AGG
(GTG)	 AG	757-916	GA	AGG
-recovered Augustus_model.g42027.t1, terminal, 757, 916

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1399
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support