-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2298

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_63062-T1
Couldn't classify 112, 237
Couldn't classify 1234, 1351
Sorry, prediction snap_scaffold_2298-snap.1-T1 fails validation.
(ATT)	 AG	112-237	GT	TTG
(AAC)	 AG	339-550	GT	AGG
(CCT)	 AG	1234-1351	GT	CGG
-recovered snap_scaffold_2298-snap.1-T1, internal, 112, 237
-recovered snap_scaffold_2298-snap.1-T1, internal, 339, 550
-recovered snap_scaffold_2298-snap.1-T1, internal, 1234, 1351
Couldn't classify 1234, 1351
Sorry, prediction Augustus_model.g42026.t1 fails validation.
(ATG)	 AC	154-237	GT	TTG
(AAC)	 AG	339-550	GT	AGG
(CCT)	 AG	1234-1351	GT	CGG
-recovered Augustus_model.g42026.t1, initial, 154, 237
-recovered Augustus_model.g42026.t1, internal, 339, 550
-recovered Augustus_model.g42026.t1, internal, 1234, 1351
Couldn't classify 339, 550
Sorry, prediction GeneMark_model.110218_t fails validation.
(AAC)	 AG	339-550	GT	AGG
(GAT)	 AG	705-720	GT	GAG
-recovered GeneMark_model.110218_t, terminal, 705, 720
-recovered GeneMark_model.110218_t, internal, 339, 550
-recovered GeneMark_model.110218_t, internal, 705, 720

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1399
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support