-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2297

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63061-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 78, 116
Couldn't classify 929, 1073
Sorry, prediction GeneMark_model.110217_t fails validation.
(CCC)	 AG	78-116	GT	GAG
(ATC)	 AG	143-166	GC	GAG
(CCC)	 AG	191-208	GT	GAG
(TCC)	 AG	233-280	GT	ATG
(TCA)	 AG	929-1073	GT	TGG
-recovered GeneMark_model.110217_t, internal, 78, 116
-recovered GeneMark_model.110217_t, internal, 143, 166
-recovered GeneMark_model.110217_t, internal, 191, 208
-recovered GeneMark_model.110217_t, internal, 233, 280
-recovered GeneMark_model.110217_t, internal, 929, 1073

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1401
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support