-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2295

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 273, 344
Couldn't classify 1298, 1388
Sorry, prediction GeneMark_model.110214_t fails validation.
(AGC)	 AG	273-344	GT	AGG
(ACC)	 AG	1298-1388	GC	GCG
-recovered GeneMark_model.110214_t, internal, 273, 344
-recovered GeneMark_model.110214_t, internal, 1298, 1388
Couldn't classify 273, 344
Sorry, prediction GlimmerHMM_glimmerT_63060-T1 fails validation.
(AGC)	 AG	273-344	GT	AGG
(ACC)	 AG	1298-1387	CG	AGC
-recovered GlimmerHMM_glimmerT_63060-T1, terminal, 1298, 1387
-recovered GlimmerHMM_glimmerT_63060-T1, internal, 273, 344
Couldn't classify 125, 206
Sorry, prediction snap_scaffold_2295-snap.1-T1 fails validation.
(CCA)	 AG	125-206	GT	AAG
(AGC)	 AG	273-349	GT	ACG
(ACC)	 AG	1298-1387	CG	AGC
-recovered snap_scaffold_2295-snap.1-T1, terminal, 1298, 1387
-recovered snap_scaffold_2295-snap.1-T1, internal, 125, 206
-recovered snap_scaffold_2295-snap.1-T1, internal, 273, 349
Couldn't classify 273, 344
Couldn't classify 1298, 1403
Sorry, prediction Augustus_model.g42025.t1 fails validation.
(AGC)	 AG	273-344	GT	AGG
(ACC)	 AG	1298-1403		CA
-recovered Augustus_model.g42025.t1, internal, 273, 344

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1403
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support