-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2294

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 574, 730
Couldn't classify 1184, 1348
Sorry, prediction snap_scaffold_2294-snap.1-T1 fails validation.
(GCT)	 AG	574-730	GT	CTG
(GAA)	 AG	1184-1348	GT	AGG
-recovered snap_scaffold_2294-snap.1-T1, internal, 574, 730
-recovered snap_scaffold_2294-snap.1-T1, internal, 1184, 1348
Valid prediction for GlimmerHMM_glimmerT_63059-T1
Couldn't classify 320, 327
Couldn't classify 1184, 1348
Sorry, prediction GeneMark_model.110213_t fails validation.
(GAG)	 AG	320-327	GT	TAG
(AAG)	 AG	359-365	GT	GAG
(GCT)	 AG	574-730	GT	CTG
(GAA)	 AG	1184-1348	GT	AGG
-recovered GeneMark_model.110213_t, internal, 320, 327
-recovered GeneMark_model.110213_t, internal, 359, 365
-recovered GeneMark_model.110213_t, internal, 574, 730
-recovered GeneMark_model.110213_t, internal, 1184, 1348
Couldn't classify 574, 730
Sorry, prediction Augustus_model.g42024.t1 fails validation.
(GCT)	 AG	574-730	GT	CTG
(GAA)	 AG	1184-1369	GG	GAG
-recovered Augustus_model.g42024.t1, terminal, 1184, 1369
-recovered Augustus_model.g42024.t1, internal, 574, 730

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1403
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support