-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2293

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 245, 365
Couldn't classify 665, 731
Sorry, prediction snap_scaffold_2293-snap.1-T1 fails validation.
(GAG)	 AG	245-365	GT	CGG
(CCT)	 AG	415-479	GT	AGG
(AAC)	 AG	665-731	GT	AGG
-recovered snap_scaffold_2293-snap.1-T1, internal, 245, 365
-recovered snap_scaffold_2293-snap.1-T1, internal, 415, 479
-recovered snap_scaffold_2293-snap.1-T1, internal, 665, 731

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 986, 1130
Sorry, prediction Augustus_model.g42023.t1 fails validation.
(GTG)	 AG	986-1130	GT	AGG
-recovered Augustus_model.g42023.t1, internal, 986, 1130
Couldn't classify 50, 85
Couldn't classify 986, 1130
Sorry, prediction GeneMark_model.110212_t fails validation.
(GGA)	 AG	50-85	GT	ATG
(GGA)	 AG	110-145	GT	ATG
(GGA)	 AG	179-223	GT	ATG
(GGA)	 AG	249-281	GT	ATG
(GGA)	 AG	315-376	GT	AAG
(GTG)	 AG	986-1130	GT	AGG
-recovered GeneMark_model.110212_t, internal, 50, 85
-recovered GeneMark_model.110212_t, internal, 110, 145
-recovered GeneMark_model.110212_t, internal, 179, 223
-recovered GeneMark_model.110212_t, internal, 249, 281
-recovered GeneMark_model.110212_t, internal, 315, 376
-recovered GeneMark_model.110212_t, internal, 986, 1130

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1405
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support