-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2292

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 65, 140
Sorry, prediction GeneMark_model.110210_t fails validation.
(GAG)	 AG	65-140	GT	ATG
(AGT)	 AG	169-222	CA	GAC
-recovered GeneMark_model.110210_t, terminal, 169, 222
-recovered GeneMark_model.110210_t, internal, 65, 140
Couldn't classify 169, 216
Sorry, prediction Augustus_model.g42022.t1 fails validation.
(AGT)	 AG	169-216	GT	AGG
(ATG)	 AG	544-634	GT	TGG
(TTC)	 AG	815-860	GT	AGG
(TCT)	 AG	1163-1193	TA	AAT
-recovered Augustus_model.g42022.t1, initial, 544, 634
-recovered Augustus_model.g42022.t1, terminal, 1163, 1193
-recovered Augustus_model.g42022.t1, internal, 169, 216
-recovered Augustus_model.g42022.t1, internal, 544, 634
-recovered Augustus_model.g42022.t1, internal, 815, 860

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2292-snap.1-T1
add_exon() Sorry, snap_scaffold_2292-snap.1-T1 234-454-terminal-1 is invalid.
Couldn't classify 11, 88
Sorry, prediction GeneMark_model.110211_t fails validation.
(GAG)	 AG	11-88	GT	GTG
(AGA)	 AG	138-178	GT	AGG
(TGG)	 AG	234-249	GT	ATG
(GAG)	 AG	275-295	GT	AGG
(AGA)	 AG	317-379	GT	AAG
(GAG)	 AG	403-450	GT	AGG
(GAG)	 AG	485-541	GT	TTG
(AAG)	 AG	887-904	GT	AGG
(GAG)	 AG	930-944	GT	AGG
(AGA)	 AG	966-995	GT	AGG
(GAG)	 AG	1044-1113	GG	GAG
-recovered GeneMark_model.110211_t, terminal, 403, 450
-recovered GeneMark_model.110211_t, terminal, 1044, 1113
-recovered GeneMark_model.110211_t, internal, 11, 88
-recovered GeneMark_model.110211_t, internal, 138, 178
-recovered GeneMark_model.110211_t, internal, 234, 249
-recovered GeneMark_model.110211_t, internal, 275, 295
-recovered GeneMark_model.110211_t, internal, 317, 379
-recovered GeneMark_model.110211_t, internal, 403, 450
-recovered GeneMark_model.110211_t, internal, 485, 541
-recovered GeneMark_model.110211_t, internal, 887, 904
-recovered GeneMark_model.110211_t, internal, 930, 944
-recovered GeneMark_model.110211_t, internal, 966, 995

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1405
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support