-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2290

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 177, 252
Sorry, prediction GeneMark_model.110208_t fails validation.
(GGA)	 AG	177-252	GT	CGG
(GGC)	 AG	299-378	GT	AGG
(GCA)	 AG	456-464	GT	AGG
(GGG)	 AG	494-626	AC	AGA
-recovered GeneMark_model.110208_t, terminal, 494, 626
-recovered GeneMark_model.110208_t, internal, 177, 252
-recovered GeneMark_model.110208_t, internal, 299, 378
-recovered GeneMark_model.110208_t, internal, 456, 464

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1406
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support