-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2287

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 32, 225
Couldn't classify 1289, 1335
Sorry, prediction GeneMark_model.110206_t fails validation.
(ACC)	 AG	32-225	GT	AGG
(GCT)	 AG	433-629	GT	GGG
(AGA)	 AG	664-697	GT	GGG
(GAG)	 AG	871-1009	GT	GCG
(TGT)	 AG	1289-1335	GT	AGG
-recovered GeneMark_model.110206_t, internal, 32, 225
-recovered GeneMark_model.110206_t, internal, 433, 629
-recovered GeneMark_model.110206_t, internal, 664, 697
-recovered GeneMark_model.110206_t, internal, 871, 1009
-recovered GeneMark_model.110206_t, internal, 1289, 1335
Couldn't classify 871, 1009
Sorry, prediction GlimmerHMM_glimmerT_63057-T1 fails validation.
(ATG)	 GC	178-225	GT	AGG
(GCT)	 AG	433-576	GT	AGG
(GAG)	 AG	871-1009	GT	GCG
-recovered GlimmerHMM_glimmerT_63057-T1, initial, 178, 225
-recovered GlimmerHMM_glimmerT_63057-T1, internal, 433, 576
-recovered GlimmerHMM_glimmerT_63057-T1, internal, 871, 1009
Couldn't classify 31, 225
Couldn't classify 1289, 1335
Sorry, prediction pasa_asmbl_30583.p1 fails validation.
(GAC)	 CA	31-225	GT	AGG
(GCT)	 AG	433-576	GT	AGG
(GAG)	 AG	871-1009	GT	GCG
(TGT)	 AG	1289-1335	GT	AGG
-recovered pasa_asmbl_30583.p1, internal, 433, 576
-recovered pasa_asmbl_30583.p1, internal, 871, 1009
-recovered pasa_asmbl_30583.p1, internal, 1289, 1335
Couldn't classify 1, 225
Couldn't classify 1289, 1335
Sorry, prediction Augustus_model.g42021.t1 fails validation.
(CCC)	 AT	1-225	GT	AGG
(GCT)	 AG	433-576	GT	AGG
(GAG)	 AG	871-1009	GT	GCG
(TGT)	 AG	1289-1335	GT	AGG
-recovered Augustus_model.g42021.t1, internal, 433, 576
-recovered Augustus_model.g42021.t1, internal, 871, 1009
-recovered Augustus_model.g42021.t1, internal, 1289, 1335
Couldn't classify 32, 225
Couldn't classify 1289, 1335
Sorry, prediction snap_scaffold_2287-snap.1-T1 fails validation.
(ACC)	 AG	32-225	GT	AGG
(GCT)	 AG	433-576	GT	AGG
(GAG)	 AG	871-1009	GT	GCG
(TGT)	 AG	1289-1335	GT	AGG
-recovered snap_scaffold_2287-snap.1-T1, internal, 32, 225
-recovered snap_scaffold_2287-snap.1-T1, internal, 433, 576
-recovered snap_scaffold_2287-snap.1-T1, internal, 871, 1009
-recovered snap_scaffold_2287-snap.1-T1, internal, 1289, 1335

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 102, 149
Couldn't classify 1209, 1355
Sorry, prediction snap_scaffold_2287-snap.2-T1 fails validation.
(CAC)	 AG	102-149	GT	ATG
(GGT)	 AG	843-936	GT	TAG
(CGA)	 AG	1209-1355	GT	AGG
-recovered snap_scaffold_2287-snap.2-T1, internal, 102, 149
-recovered snap_scaffold_2287-snap.2-T1, internal, 843, 936
-recovered snap_scaffold_2287-snap.2-T1, internal, 1209, 1355

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1335, rend_intergenic: 55  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1409
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1335, rend_intergenic: 55  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support