-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2286

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 19, 163
Sorry, prediction GeneMark_model.110205_t fails validation.
(CCA)	 AG	19-163	GT	TGG
(GAG)	 AG	202-279	GT	TGG
(GAG)	 AG	318-422	GT	CAG
(GAA)	 AG	579-633	CC	GAC
-recovered GeneMark_model.110205_t, terminal, 579, 633
-recovered GeneMark_model.110205_t, internal, 19, 163
-recovered GeneMark_model.110205_t, internal, 202, 279
-recovered GeneMark_model.110205_t, internal, 318, 422
Valid prediction for snap_scaffold_2286-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_63056-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1409
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support