-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2285

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 49, 174
Couldn't classify 910, 1011
Sorry, prediction GeneMark_model.110204_t fails validation.
(AGG)	 AG	49-174	GT	AAG
(TGA)	 AG	910-1011	GT	CAG
-recovered GeneMark_model.110204_t, internal, 49, 174
-recovered GeneMark_model.110204_t, internal, 910, 1011

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 269, 610
Sorry, prediction snap_scaffold_2285-snap.1-T1 fails validation.
(GTA)	 AG	269-610	GT	ATG
-recovered snap_scaffold_2285-snap.1-T1, internal, 269, 610
Valid prediction for GlimmerHMM_glimmerT_63055-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1410
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support