-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2284

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 77, 213
Couldn't classify 809, 934
Sorry, prediction snap_scaffold_2284-snap.1-T1 fails validation.
(GGA)	 AG	77-213	GT	CGG
(GGA)	 AG	809-934	GT	ATG
-recovered snap_scaffold_2284-snap.1-T1, internal, 77, 213
-recovered snap_scaffold_2284-snap.1-T1, internal, 809, 934
Couldn't classify 44, 213
Sorry, prediction GeneMark_model.110203_t fails validation.
(TCT)	 AG	44-213	GT	CGG
(GGA)	 AG	809-946	TT	AAT
-recovered GeneMark_model.110203_t, terminal, 809, 946
-recovered GeneMark_model.110203_t, internal, 44, 213

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1411
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support