-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2283

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2283-snap.1-T1
Couldn't classify 10, 182
Sorry, prediction GeneMark_model.110201_t fails validation.
(GAG)	 AG	10-182	GT	TGG
(GAG)	 AG	213-348	AA	GAA
-recovered GeneMark_model.110201_t, terminal, 213, 348
-recovered GeneMark_model.110201_t, internal, 10, 182

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 776, 829
Sorry, prediction GeneMark_model.110202_t fails validation.
(AGG)	 AG	776-829	GT	GGG
(AAT)	 AG	857-910	GT	GGG
(GAC)	 AG	936-960	GG	GAG
-recovered GeneMark_model.110202_t, terminal, 936, 960
-recovered GeneMark_model.110202_t, internal, 776, 829
-recovered GeneMark_model.110202_t, internal, 857, 910

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1413
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support