-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_228

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107001_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107000_t
Couldn't classify 28, 152
Sorry, prediction GeneMark_model.107002_t fails validation.
(CCT)	 AG	28-152	GT	AGG
(TGC)	 AG	497-587	GT	GGG
(GAG)	 AG	701-847	GT	AGG
(GCT)	 AG	2215-2475	AC	GAA
-recovered GeneMark_model.107002_t, terminal, 2215, 2475
-recovered GeneMark_model.107002_t, internal, 28, 152
-recovered GeneMark_model.107002_t, internal, 497, 587
-recovered GeneMark_model.107002_t, internal, 701, 847
Valid prediction for GlimmerHMM_glimmerT_61539-T1
Valid prediction for HiQ_model.g40926.t1
Couldn't classify 1, 152
Sorry, prediction pasa_asmbl_30580.p1 fails validation.
(GTG)	 TC	1-152	GT	AGG
(TGC)	 AG	497-587	GT	GGG
(GAG)	 AG	701-847	GT	AGG
(GCT)	 AG	2215-2434	GT	CGG
(ATA)	 AG	3935-4020	GT	AGG
(AAG)	 AG	4266-4295	GT	GTG
(AGC)	 AG	5268-5408	GG	AAG
-recovered pasa_asmbl_30580.p1, terminal, 5268, 5408
-recovered pasa_asmbl_30580.p1, internal, 497, 587
-recovered pasa_asmbl_30580.p1, internal, 701, 847
-recovered pasa_asmbl_30580.p1, internal, 2215, 2434
-recovered pasa_asmbl_30580.p1, internal, 3935, 4020
-recovered pasa_asmbl_30580.p1, internal, 4266, 4295
Couldn't classify 28, 152
Sorry, prediction snap_scaffold_228-snap.1-T1 fails validation.
(CCT)	 AG	28-152	GT	AGG
(TGC)	 AG	497-587	GT	GGG
(GAG)	 AG	701-847	GT	AGG
(GCT)	 AG	2215-2434	GT	CGG
(ATA)	 AG	3935-4020	GT	AGG
(AGC)	 AG	5268-5408	GG	AAG
-recovered snap_scaffold_228-snap.1-T1, terminal, 5268, 5408
-recovered snap_scaffold_228-snap.1-T1, internal, 28, 152
-recovered snap_scaffold_228-snap.1-T1, internal, 497, 587
-recovered snap_scaffold_228-snap.1-T1, internal, 701, 847
-recovered snap_scaffold_228-snap.1-T1, internal, 2215, 2434
-recovered snap_scaffold_228-snap.1-T1, internal, 3935, 4020

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9354
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support