-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2279

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1106, 1240
Sorry, prediction GeneMark_model.110199_t fails validation.
(ATG)	 AG	930-952	GT	ATG
(ACA)	 AG	1106-1240	GT	GAG
-recovered GeneMark_model.110199_t, initial, 930, 952
-recovered GeneMark_model.110199_t, internal, 930, 952
-recovered GeneMark_model.110199_t, internal, 1106, 1240

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1352, 1378
Sorry, prediction GeneMark_model.110198_t fails validation.
(ATG)	 GG	777-814	GT	GAG
(AGA)	 AG	839-1184	GT	GGG
(GGA)	 AG	1222-1262	GT	GAG
(AGC)	 AG	1352-1378	GT	CAG
-recovered GeneMark_model.110198_t, initial, 777, 814
-recovered GeneMark_model.110198_t, internal, 839, 1184
-recovered GeneMark_model.110198_t, internal, 1222, 1262
-recovered GeneMark_model.110198_t, internal, 1352, 1378

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1415
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support