-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2276

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 262, 489
Couldn't classify 515, 528
Sorry, prediction GeneMark_model.110197_t fails validation.
(AGA)	 AG	262-489	GT	GGG
(TCT)	 AG	515-528	GT	AGG
-recovered GeneMark_model.110197_t, internal, 262, 489
-recovered GeneMark_model.110197_t, internal, 515, 528

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 946, 1042
Sorry, prediction GlimmerHMM_glimmerT_63053-T1 fails validation.
(GAT)	 AG	946-1042	GT	AGG
(GAA)	 AG	1201-1325	GG	GAG
-recovered GlimmerHMM_glimmerT_63053-T1, terminal, 1201, 1325
-recovered GlimmerHMM_glimmerT_63053-T1, internal, 946, 1042
Couldn't classify 946, 1042
Couldn't classify 1201, 1293
Sorry, prediction snap_scaffold_2276-snap.1-T1 fails validation.
(GAT)	 AG	946-1042	GT	AGG
(GAA)	 AG	1201-1293	GT	GGG
-recovered snap_scaffold_2276-snap.1-T1, internal, 946, 1042
-recovered snap_scaffold_2276-snap.1-T1, internal, 1201, 1293

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1417
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support