-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2273

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 110, 171
Sorry, prediction GeneMark_model.110194_t fails validation.
(AGA)	 AG	110-171	GC	TGG
(GAA)	 AG	445-490	GT	GGG
(AGA)	 AG	516-542	GT	GGG
(TGG)	 AG	637-711	GT	GAG
(AGA)	 AG	872-922	GT	GAG
(AGA)	 AG	962-1009	GC	GAG
(AGA)	 AG	1033-1083	GT	GAG
(AAA)	 AG	1186-1194	GT	AAG
(GGA)	 AG	1311-1359	AA	GAA
-recovered GeneMark_model.110194_t, terminal, 1311, 1359
-recovered GeneMark_model.110194_t, internal, 110, 171
-recovered GeneMark_model.110194_t, internal, 445, 490
-recovered GeneMark_model.110194_t, internal, 516, 542
-recovered GeneMark_model.110194_t, internal, 637, 711
-recovered GeneMark_model.110194_t, internal, 872, 922
-recovered GeneMark_model.110194_t, internal, 962, 1009
-recovered GeneMark_model.110194_t, internal, 1033, 1083
-recovered GeneMark_model.110194_t, internal, 1186, 1194

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1419
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support