-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2270

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 336, 506
Couldn't classify 677, 856
Sorry, prediction GeneMark_model.110192_t fails validation.
(GGA)	 AG	336-506	GT	AGG
(GAC)	 AG	556-564	GT	GTG
(GTG)	 AG	588-653	GT	GTG
(GTA)	 AG	677-856	GT	TGG
-recovered GeneMark_model.110192_t, internal, 336, 506
-recovered GeneMark_model.110192_t, internal, 556, 564
-recovered GeneMark_model.110192_t, internal, 588, 653
-recovered GeneMark_model.110192_t, internal, 677, 856

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 549, 636
Sorry, prediction GlimmerHMM_glimmerT_63051-T1 fails validation.
(GCA)	 AG	549-636	GT	AGG
(GGT)	 AG	936-1099	CC	GAC
-recovered GlimmerHMM_glimmerT_63051-T1, terminal, 936, 1099
-recovered GlimmerHMM_glimmerT_63051-T1, internal, 549, 636
Couldn't classify 549, 636
Sorry, prediction Augustus_model.g42019.t1 fails validation.
(GCA)	 AG	549-636	GT	AGG
(GGT)	 AG	936-1099	CC	GAC
-recovered Augustus_model.g42019.t1, terminal, 936, 1099
-recovered Augustus_model.g42019.t1, internal, 549, 636
Couldn't classify 549, 636
Couldn't classify 936, 1072
Sorry, prediction snap_scaffold_2270-snap.1-T1 fails validation.
(GCA)	 AG	549-636	GT	AGG
(GGT)	 AG	936-1072	GT	GGG
-recovered snap_scaffold_2270-snap.1-T1, internal, 549, 636
-recovered snap_scaffold_2270-snap.1-T1, internal, 936, 1072

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1422
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support