-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_227

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9307, 9330
Sorry, prediction GeneMark_model.106999_t fails validation.
(ATG)	 TG	7402-7425	GT	AGG
(ATC)	 AG	7601-7644	GT	TGG
(GGG)	 AG	7884-7892	GT	GGG
(AGG)	 AG	8019-8258	GT	GGG
(GCT)	 AG	8296-8331	GT	GGG
(GGG)	 AG	8357-8423	GT	GGG
(TCT)	 AG	8450-8673	GT	AGG
(AGC)	 AG	9178-9183	GT	GAG
(ACT)	 AG	9307-9330	GT	GGG
-recovered GeneMark_model.106999_t, initial, 7402, 7425
-recovered GeneMark_model.106999_t, internal, 7601, 7644
-recovered GeneMark_model.106999_t, internal, 7884, 7892
-recovered GeneMark_model.106999_t, internal, 8019, 8258
-recovered GeneMark_model.106999_t, internal, 8296, 8331
-recovered GeneMark_model.106999_t, internal, 8357, 8423
-recovered GeneMark_model.106999_t, internal, 8450, 8673
-recovered GeneMark_model.106999_t, internal, 9178, 9183
-recovered GeneMark_model.106999_t, internal, 9307, 9330
Couldn't classify 6315, 6430
Couldn't classify 8457, 8644
Sorry, prediction snap_scaffold_227-snap.2-T1 fails validation.
(GCA)	 AG	6315-6430	GT	CGG
(ATC)	 AG	7601-7644	GT	TGG
(GCC)	 AG	7987-8236	GT	GGG
(AAC)	 AG	8457-8644	GT	TGG
-recovered snap_scaffold_227-snap.2-T1, internal, 6315, 6430
-recovered snap_scaffold_227-snap.2-T1, internal, 7601, 7644
-recovered snap_scaffold_227-snap.2-T1, internal, 7987, 8236
-recovered snap_scaffold_227-snap.2-T1, internal, 8457, 8644
Couldn't classify 8478, 8668
Sorry, prediction GlimmerHMM_glimmerT_61538-T1 fails validation.
(ATG)	 GC	7993-8236	GT	GGG
(ATA)	 AG	8478-8668	GT	GAG
-recovered GlimmerHMM_glimmerT_61538-T1, initial, 7993, 8236
-recovered GlimmerHMM_glimmerT_61538-T1, internal, 8478, 8668

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61537-T1
Valid prediction for GeneMark_model.106998_t
Valid prediction for GlimmerHMM_glimmerT_61536-T1
Valid prediction for snap_scaffold_227-snap.1-T1
Valid prediction for Augustus_model.g40925.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9359
-exon list size: 37


building trellis

2.6    
5.1    
7.7    
10.3    
12.8    
15.4    
17.9    
20.5    
23.1    
25.6    
28.2    
30.8    
33.3    
35.9    
38.5    
41.0    
43.6    
46.2    
48.7    
51.3    
53.8    
56.4    
59.0    
61.5    
64.1    
66.7    
69.2    
71.8    
74.4    
76.9    
79.5    
82.1    
84.6    
87.2    
89.7    
92.3    
94.9    
97.4    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support