-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2269

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 115, 180
Couldn't classify 899, 984
Sorry, prediction Augustus_model.g42018.t1 fails validation.
(GCC)	 AG	115-180	GT	AGG
(GAT)	 AG	282-359	GT	CGG
(CCC)	 AG	518-593	GT	GCG
(GAG)	 AG	899-984	GT	AGG
-recovered Augustus_model.g42018.t1, internal, 115, 180
-recovered Augustus_model.g42018.t1, internal, 282, 359
-recovered Augustus_model.g42018.t1, internal, 518, 593
-recovered Augustus_model.g42018.t1, internal, 899, 984
Couldn't classify 116, 180
Couldn't classify 899, 982
Sorry, prediction pasa_asmbl_30577.p1 fails validation.
(CCT)	 GG	116-180	GT	AGG
(GAT)	 AG	282-359	GT	CGG
(CCC)	 AG	518-593	GT	GCG
(GAG)	 AG	899-982	AG	ACA
-recovered pasa_asmbl_30577.p1, internal, 282, 359
-recovered pasa_asmbl_30577.p1, internal, 518, 593
Couldn't classify 115, 180
Couldn't classify 899, 984
Sorry, prediction snap_scaffold_2269-snap.1-T1 fails validation.
(GCC)	 AG	115-180	GT	AGG
(GAT)	 AG	282-359	GT	CGG
(CCC)	 AG	518-593	GT	GCG
(GAG)	 AG	899-984	GT	AGG
-recovered snap_scaffold_2269-snap.1-T1, internal, 115, 180
-recovered snap_scaffold_2269-snap.1-T1, internal, 282, 359
-recovered snap_scaffold_2269-snap.1-T1, internal, 518, 593
-recovered snap_scaffold_2269-snap.1-T1, internal, 899, 984
Couldn't classify 115, 180
Sorry, prediction GlimmerHMM_glimmerT_63050-T1 fails validation.
(GCC)	 AG	115-180	GT	AGG
(GAT)	 AG	282-363	GC	GAG
-recovered GlimmerHMM_glimmerT_63050-T1, terminal, 282, 363
-recovered GlimmerHMM_glimmerT_63050-T1, internal, 115, 180
-recovered GlimmerHMM_glimmerT_63050-T1, internal, 282, 363
Couldn't classify 115, 242
Couldn't classify 527, 593
Sorry, prediction GeneMark_model.110191_t fails validation.
(GCC)	 AG	115-242	GT	CTG
(AAA)	 AG	413-448	GT	AGG
(ACA)	 AG	527-593	GT	GCG
-recovered GeneMark_model.110191_t, internal, 115, 242
-recovered GeneMark_model.110191_t, internal, 413, 448
-recovered GeneMark_model.110191_t, internal, 527, 593

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1423
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support