-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2267

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 62, 136
Sorry, prediction GeneMark_model.110188_t fails validation.
(GCG)	 AG	62-136	GT	GAG
(GCG)	 AG	164-178	GC	AGG
(AAG)	 AG	203-217	GT	GGG
(GAG)	 AG	239-340	GT	GGG
(AGG)	 AG	756-875	GC	GGG
(GGA)	 AG	899-962	TT	GAT
-recovered GeneMark_model.110188_t, terminal, 899, 962
-recovered GeneMark_model.110188_t, internal, 62, 136
-recovered GeneMark_model.110188_t, internal, 164, 178
-recovered GeneMark_model.110188_t, internal, 203, 217
-recovered GeneMark_model.110188_t, internal, 239, 340
-recovered GeneMark_model.110188_t, internal, 756, 875

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 40, 143
Sorry, prediction GeneMark_model.110189_t fails validation.
(AGG)	 AG	40-143	GT	CGG
(TGA)	 AG	182-212	GT	GCG
(GGC)	 AG	279-290	GT	TTG
(GAA)	 AG	403-427	TG	AAT
-recovered GeneMark_model.110189_t, terminal, 403, 427
-recovered GeneMark_model.110189_t, internal, 40, 143
-recovered GeneMark_model.110189_t, internal, 182, 212
-recovered GeneMark_model.110189_t, internal, 279, 290

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1424
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support