-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2264

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63049-T1
Couldn't classify 897, 1351
Sorry, prediction snap_scaffold_2264-snap.1-T1 fails validation.
(ATG)	 GG	294-330	GT	CAG
(GTG)	 AG	897-1351	GT	GAG
-recovered snap_scaffold_2264-snap.1-T1, initial, 294, 330
-recovered snap_scaffold_2264-snap.1-T1, internal, 897, 1351
Couldn't classify 1222, 1351
Sorry, prediction GeneMark_model.110187_t fails validation.
(ATG)	 AA	836-841	GT	GGG
(GTG)	 AG	897-925	GT	AGG
(TGA)	 AG	955-1089	GT	GAG
(AGG)	 AG	1118-1186	GT	GAG
(AGA)	 AG	1222-1351	GT	GAG
-recovered GeneMark_model.110187_t, initial, 836, 841
add_exon() Sorry, GeneMark_model.110187_t 955-1089-terminal-1 is invalid.
-recovered GeneMark_model.110187_t, terminal, 955, 1089
-recovered GeneMark_model.110187_t, internal, 897, 925
-recovered GeneMark_model.110187_t, internal, 955, 1089
-recovered GeneMark_model.110187_t, internal, 1118, 1186
-recovered GeneMark_model.110187_t, internal, 1222, 1351

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1425
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support