-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2262

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1226, 1400
Sorry, prediction GeneMark_model.110184_t fails validation.
(ATG)	 AA	1004-1077	GT	GGG
(GAG)	 AG	1106-1141	GT	GGG
(GGG)	 AG	1170-1205	GT	GGG
(ATC)	 AG	1226-1400	GT	GAG
-recovered GeneMark_model.110184_t, initial, 1004, 1077
-recovered GeneMark_model.110184_t, internal, 1106, 1141
-recovered GeneMark_model.110184_t, internal, 1170, 1205
-recovered GeneMark_model.110184_t, internal, 1226, 1400
Couldn't classify 288, 308
Sorry, prediction GeneMark_model.110182_t fails validation.
(AGT)	 AG	288-308	GT	GAG
(AGA)	 AG	377-460	GT	GAG
(AGA)	 AG	498-516	TT	AAT
-recovered GeneMark_model.110182_t, terminal, 498, 516
-recovered GeneMark_model.110182_t, internal, 288, 308
-recovered GeneMark_model.110182_t, internal, 377, 460

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 80, 248
Couldn't classify 1271, 1378
Sorry, prediction snap_scaffold_2262-snap.1-T1 fails validation.
(TAA)	 AG	80-248	GT	GGG
(TGA)	 AG	1271-1378	GT	GGG
-recovered snap_scaffold_2262-snap.1-T1, internal, 80, 248
-recovered snap_scaffold_2262-snap.1-T1, internal, 1271, 1378
Valid prediction for GlimmerHMM_glimmerT_63046-T1
Valid prediction for GeneMark_model.110183_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1426
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support