-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2260

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 550, 570
Sorry, prediction GeneMark_model.110181_t fails validation.
(GGG)	 AG	550-570	GT	AGG
(AGA)	 AG	593-604	GT	AGG
(AGA)	 AG	633-672	GT	CTG
(CCT)	 AG	704-729	GT	AGG
(GAT)	 AG	753-763	GT	GGG
(AGG)	 AG	793-817	GT	GGG
(ACA)	 AG	855-881	GT	GGG
(GAC)	 AG	908-925	GT	GGG
(GAC)	 AG	994-1011	GT	GGG
(GGG)	 AG	1033-1117	CA	GAC
-recovered GeneMark_model.110181_t, terminal, 1033, 1117
-recovered GeneMark_model.110181_t, internal, 550, 570
-recovered GeneMark_model.110181_t, internal, 593, 604
-recovered GeneMark_model.110181_t, internal, 633, 672
-recovered GeneMark_model.110181_t, internal, 704, 729
-recovered GeneMark_model.110181_t, internal, 753, 763
-recovered GeneMark_model.110181_t, internal, 793, 817
-recovered GeneMark_model.110181_t, internal, 855, 881
-recovered GeneMark_model.110181_t, internal, 908, 925
-recovered GeneMark_model.110181_t, internal, 994, 1011

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1428
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support