-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_226

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106996_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61535-T1
Couldn't classify 36, 143
Sorry, prediction GeneMark_model.106997_t fails validation.
(CGG)	 AG	36-143	GT	GGG
(GGA)	 AG	166-220	AG	GAA
-recovered GeneMark_model.106997_t, terminal, 166, 220
-recovered GeneMark_model.106997_t, internal, 36, 143
Couldn't classify 8865, 8967
Sorry, prediction snap_scaffold_226-snap.1-T1 fails validation.
(ATG)	 GG	1733-1786	GT	CCG
(GTG)	 AG	1905-2119	GT	TGG
(GGC)	 AG	3175-3229	GT	GGG
(AGT)	 AG	3553-3646	GT	AGG
(GGA)	 AG	8865-8967	GT	TTG
-recovered snap_scaffold_226-snap.1-T1, initial, 1733, 1786
-recovered snap_scaffold_226-snap.1-T1, internal, 1905, 2119
-recovered snap_scaffold_226-snap.1-T1, internal, 3175, 3229
-recovered snap_scaffold_226-snap.1-T1, internal, 3553, 3646
-recovered snap_scaffold_226-snap.1-T1, internal, 8865, 8967
Couldn't classify 8865, 8967
Sorry, prediction Augustus_model.g40924.t1 fails validation.
(ATG)	 AA	1880-1904	GT	AGG
(TCG)	 AG	3100-3161	GT	AGG
(AGT)	 AG	3553-3646	GT	AGG
(GGA)	 AG	8865-8967	GT	TTG
-recovered Augustus_model.g40924.t1, initial, 1880, 1904
-recovered Augustus_model.g40924.t1, internal, 3100, 3161
-recovered Augustus_model.g40924.t1, internal, 3553, 3646
-recovered Augustus_model.g40924.t1, internal, 8865, 8967
Valid prediction for GeneMark_model.106995_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9360
-exon list size: 31


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support