-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2256

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2256-snap.2-T1
Valid prediction for GeneMark_model.110178_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1351, 1410
Sorry, prediction GeneMark_model.110177_t fails validation.
(ATG)	 TA	1195-1214	GT	CAG
(GAA)	 AG	1258-1299	GT	GAG
(GAA)	 AG	1351-1410	GT	GGG
-recovered GeneMark_model.110177_t, initial, 1195, 1214
-recovered GeneMark_model.110177_t, internal, 1258, 1299
-recovered GeneMark_model.110177_t, internal, 1351, 1410
Couldn't classify 955, 1012
Couldn't classify 1238, 1410
Sorry, prediction snap_scaffold_2256-snap.1-T1 fails validation.
(GTC)	 AG	955-1012	GT	AGG
(AGA)	 AG	1238-1410	GT	GGG
-recovered snap_scaffold_2256-snap.1-T1, internal, 955, 1012
-recovered snap_scaffold_2256-snap.1-T1, internal, 1238, 1410

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1431
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support