-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2255

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1291, 1403
Sorry, prediction GeneMark_model.110176_t fails validation.
(ATG)	 AG	514-527	GT	AAG
(CCT)	 AG	953-962	GT	AGG
(ATT)	 AG	1006-1081	GT	CCG
(AAG)	 AG	1291-1403	GT	GAG
-recovered GeneMark_model.110176_t, initial, 514, 527
-recovered GeneMark_model.110176_t, internal, 514, 527
-recovered GeneMark_model.110176_t, internal, 953, 962
-recovered GeneMark_model.110176_t, internal, 1006, 1081
-recovered GeneMark_model.110176_t, internal, 1291, 1403
Couldn't classify 224, 369
Sorry, prediction GlimmerHMM_glimmerT_63043-T1 fails validation.
(GTC)	 AG	224-369	GT	ATG
(ATT)	 AG	1006-1101	TG	AGT
-recovered GlimmerHMM_glimmerT_63043-T1, terminal, 1006, 1101
-recovered GlimmerHMM_glimmerT_63043-T1, internal, 224, 369
Couldn't classify 30, 114
Couldn't classify 1291, 1430
Sorry, prediction pasa_asmbl_30574.p1 fails validation.
(GAA)	 AG	30-114	GT	AGG
(GTC)	 AG	224-369	GT	ATG
(ATT)	 AG	1006-1096	GT	TGG
(AAG)	 AG	1291-1430	TT	GCT
-recovered pasa_asmbl_30574.p1, internal, 30, 114
-recovered pasa_asmbl_30574.p1, internal, 224, 369
-recovered pasa_asmbl_30574.p1, internal, 1006, 1096
Couldn't classify 224, 369
Couldn't classify 1291, 1432
Sorry, prediction Augustus_model.g42015.t1 fails validation.
(GTC)	 AG	224-369	GT	ATG
(ATT)	 AG	1006-1096	GT	TGG
(AAG)	 AG	1291-1432		TT
-recovered Augustus_model.g42015.t1, internal, 224, 369
-recovered Augustus_model.g42015.t1, internal, 1006, 1096
Couldn't classify 30, 114
Couldn't classify 1291, 1403
Sorry, prediction snap_scaffold_2255-snap.1-T1 fails validation.
(GAA)	 AG	30-114	GT	AGG
(GTC)	 AG	224-369	GT	ATG
(ATT)	 AG	1006-1096	GT	TGG
(AAG)	 AG	1291-1403	GT	GAG
-recovered snap_scaffold_2255-snap.1-T1, internal, 30, 114
-recovered snap_scaffold_2255-snap.1-T1, internal, 224, 369
-recovered snap_scaffold_2255-snap.1-T1, internal, 1006, 1096
-recovered snap_scaffold_2255-snap.1-T1, internal, 1291, 1403

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1432
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support