-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2254

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 163, 378
Sorry, prediction snap_scaffold_2254-snap.1-T1 fails validation.
(GGG)	 AG	163-378	GT	AGG
(GTG)	 AG	460-553	GT	GGG
(GTT)	 AG	846-1033	GT	GAG
-recovered snap_scaffold_2254-snap.1-T1, terminal, 846, 1033
-recovered snap_scaffold_2254-snap.1-T1, internal, 163, 378
-recovered snap_scaffold_2254-snap.1-T1, internal, 460, 553
-recovered snap_scaffold_2254-snap.1-T1, internal, 846, 1033
Couldn't classify 163, 378
Sorry, prediction Augustus_model.g42014.t1 fails validation.
(GGG)	 AG	163-378	GT	AGG
(GTG)	 AG	460-553	GT	GGG
(GTT)	 AG	846-1033	GT	GAG
-recovered Augustus_model.g42014.t1, terminal, 846, 1033
-recovered Augustus_model.g42014.t1, internal, 163, 378
-recovered Augustus_model.g42014.t1, internal, 460, 553
-recovered Augustus_model.g42014.t1, internal, 846, 1033
Couldn't classify 163, 378
Sorry, prediction GeneMark_model.110175_t fails validation.
(GGG)	 AG	163-378	GT	AGG
(GTG)	 AG	460-535	GT	CAG
(GGT)	 AG	553-557	GA	GAG
-recovered GeneMark_model.110175_t, terminal, 553, 557
-recovered GeneMark_model.110175_t, internal, 163, 378
-recovered GeneMark_model.110175_t, internal, 460, 535
Couldn't classify 163, 378
Sorry, prediction GlimmerHMM_glimmerT_63042-T1 fails validation.
(GGG)	 AG	163-378	GT	AGG
(GTG)	 AG	460-553	GT	GGG
(GTT)	 AG	846-1033	GT	GAG
-recovered GlimmerHMM_glimmerT_63042-T1, terminal, 846, 1033
-recovered GlimmerHMM_glimmerT_63042-T1, internal, 163, 378
-recovered GlimmerHMM_glimmerT_63042-T1, internal, 460, 553
-recovered GlimmerHMM_glimmerT_63042-T1, internal, 846, 1033

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1434
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support