-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2251

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63041-T1
Couldn't classify 41, 46
Sorry, prediction GeneMark_model.110172_t fails validation.
(AGA)	 AG	41-46	GT	AGG
(AGT)	 AG	67-181	GT	AAG
-recovered GeneMark_model.110172_t, terminal, 67, 181
-recovered GeneMark_model.110172_t, internal, 41, 46
-recovered GeneMark_model.110172_t, internal, 67, 181

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 56, 97
Sorry, prediction GeneMark_model.110173_t fails validation.
(GAA)	 AG	56-97	GT	TTG
(GAG)	 AG	131-232	GT	ACG
(GAA)	 AG	519-560	GT	CCG
(AGA)	 AG	599-613	GT	AGG
(ATG)	 AG	646-994	TG	GAT
-recovered GeneMark_model.110173_t, terminal, 646, 994
-recovered GeneMark_model.110173_t, internal, 56, 97
-recovered GeneMark_model.110173_t, internal, 131, 232
-recovered GeneMark_model.110173_t, internal, 519, 560
-recovered GeneMark_model.110173_t, internal, 599, 613
Valid prediction for snap_scaffold_2251-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1435
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support