-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_225 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 6744, 6939 Sorry, prediction snap_scaffold_225-snap.2-T1 fails validation. (ATG) AA 6022-6310 GT ACG (ATA) AG 6744-6939 GT AGG -recovered snap_scaffold_225-snap.2-T1, initial, 6022, 6310 -recovered snap_scaffold_225-snap.2-T1, internal, 6744, 6939 Valid prediction for GlimmerHMM_glimmerT_61534-T1 add_exon() Sorry, GlimmerHMM_glimmerT_61534-T1 2892-3688-terminal-1 is invalid. Couldn't classify 478, 498 Sorry, prediction GeneMark_model.106992_t fails validation. (ACA) AG 478-498 GT GAG (AGT) AG 665-757 GT GTG (GAG) AG 786-833 GT GTG (GAG) AG 862-909 GT GTG (GCA) AG 1506-1526 GT CAG (GCA) AG 1554-1571 GT AGG (AGA) AG 1616-1621 GT AGG (AGA) AG 1646-1651 GT AGG (GTT) AG 1696-1797 GT TGG (GTT) AG 1821-1829 GT TGG (TAG) AG 1850-1867 GT AGG (AGA) AG 1892-1897 GT AGG (AGA) AG 1922-1927 GT AGG (AGA) AG 1952-1957 GT AGG (AGA) AG 1982-1987 GT AGG (AGA) AG 2012-2026 GT TGG (GGG) AG 2174-2222 GG AAG -recovered GeneMark_model.106992_t, terminal, 2174, 2222 -recovered GeneMark_model.106992_t, internal, 478, 498 -recovered GeneMark_model.106992_t, internal, 665, 757 -recovered GeneMark_model.106992_t, internal, 786, 833 -recovered GeneMark_model.106992_t, internal, 862, 909 -recovered GeneMark_model.106992_t, internal, 1506, 1526 -recovered GeneMark_model.106992_t, internal, 1554, 1571 -recovered GeneMark_model.106992_t, internal, 1616, 1621 -recovered GeneMark_model.106992_t, internal, 1646, 1651 -recovered GeneMark_model.106992_t, internal, 1696, 1797 -recovered GeneMark_model.106992_t, internal, 1821, 1829 -recovered GeneMark_model.106992_t, internal, 1850, 1867 -recovered GeneMark_model.106992_t, internal, 1892, 1897 -recovered GeneMark_model.106992_t, internal, 1922, 1927 -recovered GeneMark_model.106992_t, internal, 1952, 1957 -recovered GeneMark_model.106992_t, internal, 1982, 1987 -recovered GeneMark_model.106992_t, internal, 2012, 2026 Couldn't classify 7178, 7243 Sorry, prediction GeneMark_model.106994_t fails validation. (ATG) AA 3854-4078 GT GAG (CAA) AG 4171-4184 GT GAG (CTT) AG 4239-4346 GT AGG (GGA) AG 4484-4597 GC GAG (GAG) AG 4629-4796 GT GGG (GGA) AG 5119-5124 GT AGG (CCA) AG 5157-5189 GC GAG (AGA) AG 5213-5242 GT AGG (AGA) AG 5269-5286 GT AGG (AGA) AG 5313-5402 GT CTG (GAG) AG 6126-6143 GT AAG (GGG) AG 6178-6323 GT CTG (TGC) AG 6606-6690 GT AAG (GAA) AG 6724-6861 GT CAG (GGA) AG 6892-6939 GT AGG (GAG) AG 6974-7147 GT GAG (AGG) AG 7178-7243 GT AGG -recovered GeneMark_model.106994_t, initial, 3854, 4078 -recovered GeneMark_model.106994_t, internal, 4171, 4184 -recovered GeneMark_model.106994_t, internal, 4239, 4346 -recovered GeneMark_model.106994_t, internal, 4484, 4597 -recovered GeneMark_model.106994_t, internal, 4629, 4796 -recovered GeneMark_model.106994_t, internal, 5119, 5124 -recovered GeneMark_model.106994_t, internal, 5157, 5189 -recovered GeneMark_model.106994_t, internal, 5213, 5242 -recovered GeneMark_model.106994_t, internal, 5269, 5286 -recovered GeneMark_model.106994_t, internal, 5313, 5402 -recovered GeneMark_model.106994_t, internal, 6126, 6143 -recovered GeneMark_model.106994_t, internal, 6178, 6323 -recovered GeneMark_model.106994_t, internal, 6606, 6690 -recovered GeneMark_model.106994_t, internal, 6724, 6861 -recovered GeneMark_model.106994_t, internal, 6892, 6939 -recovered GeneMark_model.106994_t, internal, 6974, 7147 -recovered GeneMark_model.106994_t, internal, 7178, 7243 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.106993_t Couldn't classify 5588, 5714 Sorry, prediction pasa_asmbl_30573.p2 fails validation. (CAC) CA 5588-5714 GC AGG (ACC) AG 6168-6511 CT AAC -recovered pasa_asmbl_30573.p2, terminal, 6168, 6511 Couldn't classify 224, 271 Couldn't classify 8930, 9021 Sorry, prediction snap_scaffold_225-snap.1-T1 fails validation. (CAC) AG 224-271 GT AGG (ACG) AG 5041-5119 GT TAG (GGC) AG 5679-6474 GT TGG (TCG) AG 8930-9021 GT CGG -recovered snap_scaffold_225-snap.1-T1, internal, 224, 271 -recovered snap_scaffold_225-snap.1-T1, internal, 5041, 5119 -recovered snap_scaffold_225-snap.1-T1, internal, 5679, 6474 -recovered snap_scaffold_225-snap.1-T1, internal, 8930, 9021 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9139, rend_intergenic: 6022 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 9362 -exon list size: 87 building trellis 1.1 2.2 3.4 4.5 5.6 6.7 7.9 9.0 10.1 11.2 12.4 13.5 14.6 15.7 16.9 18.0 19.1 20.2 21.3 22.5 23.6 24.7 25.8 27.0 28.1 29.2 30.3 31.5 32.6 33.7 34.8 36.0 37.1 38.2 39.3 40.4 41.6 42.7 43.8 44.9 46.1 47.2 48.3 49.4 50.6 51.7 52.8 53.9 55.1 56.2 57.3 58.4 59.6 60.7 61.8 62.9 64.0 65.2 66.3 67.4 68.5 69.7 70.8 71.9 73.0 74.2 75.3 76.4 77.5 78.7 79.8 80.9 82.0 83.1 84.3 85.4 86.5 87.6 88.8 89.9 91.0 92.1 93.3 94.4 95.5 96.6 97.8 98.9 -found 1 predictions from path traversal Error with prediction: snap lend_intergenic: 9139, rend_intergenic: 6022 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support