-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2248

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 576, 1076
Sorry, prediction snap_scaffold_2248-snap.1-T1 fails validation.
(ATG)	 AG	26-142	GT	GGG
(AGA)	 AG	576-1076	GT	AAG
-recovered snap_scaffold_2248-snap.1-T1, initial, 26, 142
-recovered snap_scaffold_2248-snap.1-T1, internal, 26, 142
-recovered snap_scaffold_2248-snap.1-T1, internal, 576, 1076
Couldn't classify 13, 38
Sorry, prediction GeneMark_model.110168_t fails validation.
(GGC)	 AG	13-38	GT	GGG
(GGG)	 AG	64-171	GT	GGG
(CAA)	 AG	491-697	GT	CAG
(AGG)	 AG	721-795	GT	CAG
(AGG)	 AG	819-842	GT	GGG
(TCG)	 AG	865-891	GT	CAG
(AGG)	 AG	915-929	GT	GAG
(GAG)	 AG	1071-1080	GT	GAG
-recovered GeneMark_model.110168_t, terminal, 1071, 1080
-recovered GeneMark_model.110168_t, internal, 13, 38
-recovered GeneMark_model.110168_t, internal, 64, 171
-recovered GeneMark_model.110168_t, internal, 491, 697
-recovered GeneMark_model.110168_t, internal, 721, 795
-recovered GeneMark_model.110168_t, internal, 819, 842
-recovered GeneMark_model.110168_t, internal, 865, 891
-recovered GeneMark_model.110168_t, internal, 915, 929
-recovered GeneMark_model.110168_t, internal, 1071, 1080

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1437
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support