-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2245

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 84, 113
Couldn't classify 1041, 1071
Sorry, prediction GeneMark_model.110166_t fails validation.
(ACT)	 AG	84-113	GT	TGG
(GGT)	 AG	204-221	GT	TGG
(CAG)	 AG	935-967	GC	GAG
(CAG)	 AG	993-1007	GT	AGG
(AGC)	 AG	1041-1071	GT	AGG
-recovered GeneMark_model.110166_t, internal, 84, 113
-recovered GeneMark_model.110166_t, internal, 204, 221
-recovered GeneMark_model.110166_t, internal, 935, 967
-recovered GeneMark_model.110166_t, internal, 993, 1007
-recovered GeneMark_model.110166_t, internal, 1041, 1071

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1438
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support