-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2244

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 132, 187
Sorry, prediction GeneMark_model.110165_t fails validation.
(ACA)	 AG	132-187	GT	CGG
(AGG)	 AG	461-547	GT	AGG
(GAG)	 AG	576-599	GT	AGG
(AGG)	 AG	623-673	GT	CAG
(AGA)	 AG	708-821	GC	GCG
(AGC)	 AG	846-875	GC	GAG
(AAG)	 AG	900-953	GC	GAG
(ACT)	 AG	1029-1103	GT	GTG
(AGA)	 AG	1170-1383	AG	AGA
-recovered GeneMark_model.110165_t, terminal, 1170, 1383
-recovered GeneMark_model.110165_t, internal, 132, 187
-recovered GeneMark_model.110165_t, internal, 461, 547
-recovered GeneMark_model.110165_t, internal, 576, 599
-recovered GeneMark_model.110165_t, internal, 623, 673
-recovered GeneMark_model.110165_t, internal, 708, 821
-recovered GeneMark_model.110165_t, internal, 846, 875
-recovered GeneMark_model.110165_t, internal, 900, 953
-recovered GeneMark_model.110165_t, internal, 1029, 1103
Couldn't classify 132, 224
Couldn't classify 429, 599
Sorry, prediction snap_scaffold_2244-snap.1-T1 fails validation.
(ACA)	 AG	132-224	GT	GAG
(ACT)	 AG	429-599	GT	AGG
-recovered snap_scaffold_2244-snap.1-T1, internal, 132, 224
-recovered snap_scaffold_2244-snap.1-T1, internal, 429, 599

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1439
-exon list size: 23


building trellis

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8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support