-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2241

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1402, 1431
Sorry, prediction GeneMark_model.110162_t fails validation.
(ATG)	 TT	295-406	GT	AAG
(GAG)	 AG	512-578	GT	CTG
(GGG)	 AG	614-622	GT	CAG
(AGG)	 AG	643-783	GT	GGG
(AGA)	 AG	914-919	GT	AGG
(AGA)	 AG	944-949	GT	AGG
(CAG)	 AG	970-987	GT	CTG
(AGG)	 AG	1402-1431	GT	GGG
-recovered GeneMark_model.110162_t, initial, 295, 406
-recovered GeneMark_model.110162_t, internal, 512, 578
-recovered GeneMark_model.110162_t, internal, 614, 622
-recovered GeneMark_model.110162_t, internal, 643, 783
-recovered GeneMark_model.110162_t, internal, 914, 919
-recovered GeneMark_model.110162_t, internal, 944, 949
-recovered GeneMark_model.110162_t, internal, 970, 987
-recovered GeneMark_model.110162_t, internal, 1402, 1431

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1444
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support