-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_224

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106990_t
Couldn't classify 5810, 5947
Sorry, prediction snap_scaffold_224-snap.3-T1 fails validation.
(ATG)	 GT	1852-2063	GT	ATG
(GGA)	 AG	5668-5712	GT	AGG
(TAA)	 AG	5810-5947	GT	TGG
-recovered snap_scaffold_224-snap.3-T1, initial, 1852, 2063
-recovered snap_scaffold_224-snap.3-T1, internal, 5668, 5712
-recovered snap_scaffold_224-snap.3-T1, internal, 5810, 5947
Valid prediction for snap_scaffold_224-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 222, 265
Sorry, prediction GlimmerHMM_glimmerT_61533-T1 fails validation.
(TTT)	 AG	222-265	GT	AGG
(TCT)	 AG	2583-2660	GT	TGG
(GGA)	 AG	3510-3706	GT	TGG
(GTG)	 AG	5783-6052	GT	CGG
(GGT)	 AG	9192-9217	TG	GAT
-recovered GlimmerHMM_glimmerT_61533-T1, terminal, 9192, 9217
-recovered GlimmerHMM_glimmerT_61533-T1, internal, 222, 265
-recovered GlimmerHMM_glimmerT_61533-T1, internal, 2583, 2660
-recovered GlimmerHMM_glimmerT_61533-T1, internal, 3510, 3706
-recovered GlimmerHMM_glimmerT_61533-T1, internal, 5783, 6052
Couldn't classify 222, 265
Sorry, prediction Augustus_model.g40923.t1 fails validation.
(TTT)	 AG	222-265	GT	AGG
(TCT)	 AG	2583-2660	GT	TGG
(GGA)	 AG	3510-3706	GT	TGG
(GTG)	 AG	5783-5847	GT	AGG
(GTG)	 AG	5946-6052	GT	CGG
(GAC)	 AG	6298-6431	GT	ACG
(GCA)	 AG	8035-8108	CA	AGC
-recovered Augustus_model.g40923.t1, terminal, 8035, 8108
-recovered Augustus_model.g40923.t1, internal, 222, 265
-recovered Augustus_model.g40923.t1, internal, 2583, 2660
-recovered Augustus_model.g40923.t1, internal, 3510, 3706
-recovered Augustus_model.g40923.t1, internal, 5783, 5847
-recovered Augustus_model.g40923.t1, internal, 5946, 6052
-recovered Augustus_model.g40923.t1, internal, 6298, 6431
Valid prediction for GeneMark_model.106991_t
Couldn't classify 222, 265
Couldn't classify 9192, 9332
Sorry, prediction snap_scaffold_224-snap.1-T1 fails validation.
(TTT)	 AG	222-265	GT	AGG
(GGA)	 AG	3510-3706	GT	TGG
(GTG)	 AG	5783-5847	GT	AGG
(GTG)	 AG	5946-6052	GT	CGG
(GAC)	 AG	6298-6400	GT	AGG
(GGT)	 AG	9192-9332	GT	TGG
-recovered snap_scaffold_224-snap.1-T1, internal, 222, 265
-recovered snap_scaffold_224-snap.1-T1, internal, 3510, 3706
-recovered snap_scaffold_224-snap.1-T1, internal, 5783, 5847
-recovered snap_scaffold_224-snap.1-T1, internal, 5946, 6052
-recovered snap_scaffold_224-snap.1-T1, internal, 6298, 6400
-recovered snap_scaffold_224-snap.1-T1, internal, 9192, 9332
Couldn't classify 2584, 2660
Couldn't classify 6298, 6400
Sorry, prediction pasa_asmbl_30571.p1 fails validation.
(CTG)	 GT	2584-2660	GT	TGG
(GGA)	 AG	3510-3706	GT	TGG
(GTG)	 AG	5783-5847	GT	AGG
(GTG)	 AG	5946-6052	GT	CGG
(GAC)	 AG	6298-6400	GT	AGG
-recovered pasa_asmbl_30571.p1, internal, 3510, 3706
-recovered pasa_asmbl_30571.p1, internal, 5783, 5847
-recovered pasa_asmbl_30571.p1, internal, 5946, 6052
-recovered pasa_asmbl_30571.p1, internal, 6298, 6400

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9149, rend_intergenic: 1310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9370
-exon list size: 40


building trellis

2.4    
4.8    
7.1    
9.5    
11.9    
14.3    
16.7    
19.0    
21.4    
23.8    
26.2    
28.6    
31.0    
33.3    
35.7    
38.1    
40.5    
42.9    
45.2    
47.6    
50.0    
52.4    
54.8    
57.1    
59.5    
61.9    
64.3    
66.7    
69.0    
71.4    
73.8    
76.2    
78.6    
81.0    
83.3    
85.7    
88.1    
90.5    
92.9    
95.2    
97.6    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 9149, rend_intergenic: 1310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support