-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2239

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 758, 865
Sorry, prediction snap_scaffold_2239-snap.1-T1 fails validation.
(ATG)	 GG	49-230	GT	AGG
(TCT)	 AG	758-865	GT	AGG
-recovered snap_scaffold_2239-snap.1-T1, initial, 49, 230
-recovered snap_scaffold_2239-snap.1-T1, internal, 758, 865
Couldn't classify 39, 107
Couldn't classify 1239, 1310
Sorry, prediction GeneMark_model.110160_t fails validation.
(GGA)	 AG	39-107	GT	AAG
(GGA)	 AG	141-230	GT	AGG
(GCC)	 AG	783-788	GT	CTG
(AGA)	 AG	969-983	GT	GAG
(AGT)	 AG	1007-1033	GT	GAG
(AGA)	 AG	1061-1075	GT	GAG
(AGT)	 AG	1097-1159	GT	GAG
(AGA)	 AG	1199-1213	GT	AAG
(TGA)	 AG	1239-1310	GT	GCG
-recovered GeneMark_model.110160_t, terminal, 1061, 1075
-recovered GeneMark_model.110160_t, terminal, 1199, 1213
-recovered GeneMark_model.110160_t, internal, 39, 107
-recovered GeneMark_model.110160_t, internal, 141, 230
-recovered GeneMark_model.110160_t, internal, 783, 788
-recovered GeneMark_model.110160_t, internal, 969, 983
-recovered GeneMark_model.110160_t, internal, 1007, 1033
-recovered GeneMark_model.110160_t, internal, 1061, 1075
-recovered GeneMark_model.110160_t, internal, 1097, 1159
-recovered GeneMark_model.110160_t, internal, 1199, 1213
-recovered GeneMark_model.110160_t, internal, 1239, 1310

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1448
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support