-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2238

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 211, 462
Sorry, prediction GeneMark_model.110159_t fails validation.
(GAT)	 AG	211-462	GT	AGG
(CGG)	 AG	1233-1436	GC	GAG
add_exon() Sorry, GeneMark_model.110159_t 211-462-terminal-1 is invalid.
-recovered GeneMark_model.110159_t, terminal, 211, 462
add_exon() Sorry, GeneMark_model.110159_t 1233-1436-terminal-1 is invalid.
-recovered GeneMark_model.110159_t, terminal, 1233, 1436
-recovered GeneMark_model.110159_t, internal, 211, 462
-recovered GeneMark_model.110159_t, internal, 1233, 1436
Valid prediction for GlimmerHMM_glimmerT_63038-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63038-T1 211-530-terminal-1 is invalid.
Couldn't classify 211, 462
Couldn't classify 1233, 1448
Sorry, prediction Augustus_model.g42011.t1 fails validation.
(GAT)	 AG	211-462	GT	AGG
(CGG)	 AG	1233-1448		GG
add_exon() Sorry, Augustus_model.g42011.t1 211-462-terminal-1 is invalid.
-recovered Augustus_model.g42011.t1, terminal, 211, 462
-recovered Augustus_model.g42011.t1, internal, 211, 462
Valid prediction for GlimmerHMM_glimmerT_63037-T1
Couldn't classify 211, 462
Couldn't classify 1233, 1432
Sorry, prediction snap_scaffold_2238-snap.1-T1 fails validation.
(GAT)	 AG	211-462	GT	AGG
(CGG)	 AG	1233-1432	GT	AGG
add_exon() Sorry, snap_scaffold_2238-snap.1-T1 211-462-terminal-1 is invalid.
-recovered snap_scaffold_2238-snap.1-T1, terminal, 211, 462
-recovered snap_scaffold_2238-snap.1-T1, internal, 211, 462
-recovered snap_scaffold_2238-snap.1-T1, internal, 1233, 1432

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1448
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support