-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2237

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1211, 1257
Sorry, prediction GlimmerHMM_glimmerT_63036-T1 fails validation.
(ATG)	 TG	247-329	GT	ATG
(TGC)	 AG	700-773	GT	TGG
(ACA)	 AG	867-981	GT	AGG
(GGA)	 AG	1211-1257	GT	GGG
-recovered GlimmerHMM_glimmerT_63036-T1, initial, 247, 329
-recovered GlimmerHMM_glimmerT_63036-T1, internal, 700, 773
-recovered GlimmerHMM_glimmerT_63036-T1, internal, 867, 981
-recovered GlimmerHMM_glimmerT_63036-T1, internal, 1211, 1257
Couldn't classify 227, 329
Couldn't classify 1163, 1257
Sorry, prediction GeneMark_model.110158_t fails validation.
(ACG)	 AG	227-329	GT	ATG
(TGC)	 AG	700-773	GT	TGG
(ACA)	 AG	867-981	GT	AGG
(AGA)	 AG	1163-1257	GT	GGG
-recovered GeneMark_model.110158_t, internal, 227, 329
-recovered GeneMark_model.110158_t, internal, 700, 773
-recovered GeneMark_model.110158_t, internal, 867, 981
-recovered GeneMark_model.110158_t, internal, 1163, 1257
Couldn't classify 227, 329
Couldn't classify 1211, 1257
Sorry, prediction Augustus_model.g42010.t1 fails validation.
(ACG)	 AG	227-329	GT	ATG
(TGC)	 AG	700-773	GT	TGG
(ACA)	 AG	867-981	GT	AGG
(GGA)	 AG	1211-1257	GT	GGG
-recovered Augustus_model.g42010.t1, internal, 227, 329
-recovered Augustus_model.g42010.t1, internal, 700, 773
-recovered Augustus_model.g42010.t1, internal, 867, 981
-recovered Augustus_model.g42010.t1, internal, 1211, 1257
Couldn't classify 227, 329
Couldn't classify 1211, 1257
Sorry, prediction snap_scaffold_2237-snap.1-T1 fails validation.
(ACG)	 AG	227-329	GT	ATG
(TGC)	 AG	700-773	GT	TGG
(ACA)	 AG	867-981	GT	AGG
(GGA)	 AG	1211-1257	GT	GGG
-recovered snap_scaffold_2237-snap.1-T1, internal, 227, 329
-recovered snap_scaffold_2237-snap.1-T1, internal, 700, 773
-recovered snap_scaffold_2237-snap.1-T1, internal, 867, 981
-recovered snap_scaffold_2237-snap.1-T1, internal, 1211, 1257
Couldn't classify 226, 329
Couldn't classify 1211, 1256
Sorry, prediction pasa_asmbl_30569.p1 fails validation.
(GAC)	 CA	226-329	GT	ATG
(TGC)	 AG	700-773	GT	TGG
(ACA)	 AG	867-981	GT	AGG
(GGA)	 AG	1211-1256	GG	TGG
-recovered pasa_asmbl_30569.p1, internal, 700, 773
-recovered pasa_asmbl_30569.p1, internal, 867, 981

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1448
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support