-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2234

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 769, 933
Couldn't classify 1284, 1387
Sorry, prediction snap_scaffold_2234-snap.2-T1 fails validation.
(TGT)	 AG	769-933	GT	TGG
(ATC)	 AG	1284-1387	GT	TGG
-recovered snap_scaffold_2234-snap.2-T1, internal, 769, 933
-recovered snap_scaffold_2234-snap.2-T1, internal, 1284, 1387

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2234-snap.1-T1
add_exon() Sorry, snap_scaffold_2234-snap.1-T1 836-1247-terminal-1 is invalid.
Couldn't classify 36, 44
Couldn't classify 895, 1436
Sorry, prediction GeneMark_model.110156_t fails validation.
(GTG)	 AG	36-44	GT	ATG
(AGG)	 AG	895-1436	GC	ACG
-recovered GeneMark_model.110156_t, internal, 36, 44
-recovered GeneMark_model.110156_t, internal, 895, 1436
Valid prediction for GlimmerHMM_glimmerT_63035-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1454
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support