-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2233

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 901, 1004
Couldn't classify 1209, 1247
Sorry, prediction GeneMark_model.110155_t fails validation.
(AAA)	 AG	901-1004	GT	GAG
(GCT)	 AG	1209-1247	GT	GAG
-recovered GeneMark_model.110155_t, internal, 901, 1004
-recovered GeneMark_model.110155_t, internal, 1209, 1247

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_63034-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63034-T1 119-768-terminal-1 is invalid.
Couldn't classify 806, 1455
Sorry, prediction Augustus_model.g42007.t1 fails validation.
(ATG)	 AC	806-1455		AA
Valid prediction for GlimmerHMM_glimmerT_63033-T1
Couldn't classify 755, 1429
Sorry, prediction snap_scaffold_2233-snap.1-T1 fails validation.
(ATG)	 AC	190-639	GT	CAG
(GAA)	 AG	755-1429	GT	TGG
-recovered snap_scaffold_2233-snap.1-T1, initial, 190, 639
-recovered snap_scaffold_2233-snap.1-T1, internal, 755, 1429
Couldn't classify 1, 768
Sorry, prediction Augustus_model.g42008.t1 fails validation.
(GAC)	 AA	1-768	GA	GAG

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1455
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support