-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2232

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1354, 1411
Sorry, prediction GeneMark_model.110154_t fails validation.
(ATG)	 TG	681-694	GT	GAG
(AGA)	 AG	745-786	GT	AGG
(AGA)	 AG	876-966	GT	CCG
(CCG)	 AG	998-1044	GT	TGG
(GCA)	 AG	1094-1126	GT	CGG
(AGA)	 AG	1160-1171	GC	AGG
(AGA)	 AG	1199-1243	GC	AGG
(AGG)	 AG	1266-1331	GC	AGG
(GCA)	 AG	1354-1411	GT	AGG
-recovered GeneMark_model.110154_t, initial, 681, 694
-recovered GeneMark_model.110154_t, internal, 745, 786
-recovered GeneMark_model.110154_t, internal, 876, 966
-recovered GeneMark_model.110154_t, internal, 998, 1044
-recovered GeneMark_model.110154_t, internal, 1094, 1126
-recovered GeneMark_model.110154_t, internal, 1160, 1171
-recovered GeneMark_model.110154_t, internal, 1199, 1243
-recovered GeneMark_model.110154_t, internal, 1266, 1331
-recovered GeneMark_model.110154_t, internal, 1354, 1411
Couldn't classify 38, 88
Sorry, prediction GeneMark_model.110152_t fails validation.
(GGA)	 AG	38-88	GT	GAG
(AGC)	 AG	114-152	GT	ACG
(CTC)	 AG	197-257	CT	AAC
-recovered GeneMark_model.110152_t, terminal, 197, 257
-recovered GeneMark_model.110152_t, internal, 38, 88
-recovered GeneMark_model.110152_t, internal, 114, 152

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 405, 538
Couldn't classify 748, 883
Sorry, prediction snap_scaffold_2232-snap.1-T1 fails validation.
(AGG)	 AG	405-538	GT	TGG
(AAC)	 AG	748-883	GT	GGG
-recovered snap_scaffold_2232-snap.1-T1, internal, 405, 538
-recovered snap_scaffold_2232-snap.1-T1, internal, 748, 883
Couldn't classify 405, 538
Couldn't classify 748, 883
Sorry, prediction Augustus_model.g42006.t1 fails validation.
(AGG)	 AG	405-538	GT	TGG
(AAC)	 AG	748-883	GT	GGG
-recovered Augustus_model.g42006.t1, internal, 405, 538
-recovered Augustus_model.g42006.t1, internal, 748, 883
Valid prediction for GeneMark_model.110153_t
Couldn't classify 405, 538
Sorry, prediction GlimmerHMM_glimmerT_63032-T1 fails validation.
(AGG)	 AG	405-538	GT	TGG
(AAC)	 AG	748-883	GT	GGG
(GAG)	 AG	1041-1114	GA	GAG
-recovered GlimmerHMM_glimmerT_63032-T1, terminal, 1041, 1114
-recovered GlimmerHMM_glimmerT_63032-T1, internal, 405, 538
-recovered GlimmerHMM_glimmerT_63032-T1, internal, 748, 883

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1456
-exon list size: 38


building trellis

2.5    
5.0    
7.5    
10.0    
12.5    
15.0    
17.5    
20.0    
22.5    
25.0    
27.5    
30.0    
32.5    
35.0    
37.5    
40.0    
42.5    
45.0    
47.5    
50.0    
52.5    
55.0    
57.5    
60.0    
62.5    
65.0    
67.5    
70.0    
72.5    
75.0    
77.5    
80.0    
82.5    
85.0    
87.5    
90.0    
92.5    
95.0    
97.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support