-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_223

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106986_t
add_exon() Sorry, GeneMark_model.106986_t 647-773-terminal-1 is invalid.
Couldn't classify 9047, 9134
Sorry, prediction GeneMark_model.106989_t fails validation.
(ATG)	 TG	8959-9026	GT	GGG
(GGG)	 AG	9047-9134	GT	GAG
-recovered GeneMark_model.106989_t, initial, 8959, 9026
-recovered GeneMark_model.106989_t, internal, 9047, 9134
Valid prediction for GeneMark_model.106988_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3314, 3611
Couldn't classify 9086, 9178
Sorry, prediction snap_scaffold_223-snap.1-T1 fails validation.
(AGT)	 AG	3314-3611	GT	AGG
(ATG)	 AG	9086-9178	GT	TGG
add_exon() Sorry, snap_scaffold_223-snap.1-T1 9086-9178-initial-1 is invalid.
-recovered snap_scaffold_223-snap.1-T1, initial, 9086, 9178
-recovered snap_scaffold_223-snap.1-T1, internal, 3314, 3611
-recovered snap_scaffold_223-snap.1-T1, internal, 9086, 9178
Valid prediction for GeneMark_model.106987_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9395
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support