-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2227

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 132, 264
Sorry, prediction Augustus_model.g42003.t1 fails validation.
(TGT)	 AG	132-264	GT	AGG
(TTA)	 AG	661-735	TC	GAT
-recovered Augustus_model.g42003.t1, terminal, 661, 735
-recovered Augustus_model.g42003.t1, internal, 132, 264
Couldn't classify 55, 275
Couldn't classify 426, 435
Sorry, prediction GeneMark_model.110150_t fails validation.
(TCC)	 AG	55-275	GT	GGG
(GCT)	 AG	308-313	GT	GGG
(TTG)	 AG	342-362	GT	AGG
(GGG)	 AG	384-404	GT	GGG
(GTG)	 AG	426-435	GT	AGG
-recovered GeneMark_model.110150_t, internal, 55, 275
-recovered GeneMark_model.110150_t, internal, 308, 313
-recovered GeneMark_model.110150_t, internal, 342, 362
-recovered GeneMark_model.110150_t, internal, 384, 404
-recovered GeneMark_model.110150_t, internal, 426, 435
Couldn't classify 55, 264
Sorry, prediction snap_scaffold_2227-snap.1-T1 fails validation.
(TCC)	 AG	55-264	GT	AGG
-recovered snap_scaffold_2227-snap.1-T1, internal, 55, 264

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1460
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support