-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2226

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 52, 78
Couldn't classify 1100, 1156
Sorry, prediction GeneMark_model.110149_t fails validation.
(AAA)	 AG	52-78	GT	GAG
(AGA)	 AG	101-113	GT	TGG
(CGG)	 AG	151-251	GT	GAG
(CTC)	 AG	332-376	GT	GAG
(GAG)	 AG	513-527	GT	AAG
(GGG)	 AG	706-720	GT	ATG
(AAG)	 AG	746-769	GT	GAG
(GAG)	 AG	801-830	GT	AAG
(GGG)	 AG	856-885	GT	AAG
(ACC)	 AG	1100-1156	GT	ATG
-recovered GeneMark_model.110149_t, internal, 52, 78
-recovered GeneMark_model.110149_t, internal, 101, 113
-recovered GeneMark_model.110149_t, internal, 151, 251
-recovered GeneMark_model.110149_t, internal, 332, 376
-recovered GeneMark_model.110149_t, internal, 513, 527
-recovered GeneMark_model.110149_t, internal, 706, 720
-recovered GeneMark_model.110149_t, internal, 746, 769
-recovered GeneMark_model.110149_t, internal, 801, 830
-recovered GeneMark_model.110149_t, internal, 856, 885
-recovered GeneMark_model.110149_t, internal, 1100, 1156

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1460
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support