-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2221

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63026-T1
Valid prediction for GlimmerHMM_glimmerT_63027-T1
Couldn't classify 323, 400
Couldn't classify 1055, 1262
Sorry, prediction GeneMark_model.110142_t fails validation.
(GAG)	 AG	323-400	GT	CAG
(CAG)	 AG	513-541	GT	CCG
(GGA)	 AG	571-780	GT	GAG
(AGA)	 AG	812-820	GT	CTG
(GCA)	 AG	977-1022	GT	AGG
(AAC)	 AG	1055-1262	GT	AGG
-recovered GeneMark_model.110142_t, internal, 323, 400
-recovered GeneMark_model.110142_t, internal, 513, 541
-recovered GeneMark_model.110142_t, internal, 571, 780
-recovered GeneMark_model.110142_t, internal, 812, 820
-recovered GeneMark_model.110142_t, internal, 977, 1022
-recovered GeneMark_model.110142_t, internal, 1055, 1262
Valid prediction for Augustus_model.g42000.t1
Couldn't classify 323, 451
Sorry, prediction snap_scaffold_2221-snap.1-T1 fails validation.
(GAG)	 AG	323-451	GT	CAG
(GTA)	 AG	1023-1273	AG	GAA
-recovered snap_scaffold_2221-snap.1-T1, terminal, 1023, 1273
-recovered snap_scaffold_2221-snap.1-T1, internal, 323, 451
Valid prediction for Augustus_model.g41999.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1461
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support