-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2220

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 453, 501
Sorry, prediction GeneMark_model.110141_t fails validation.
(TGC)	 AG	453-501	GT	GAG
(AGG)	 AG	661-669	GT	GAG
(ACA)	 AG	694-708	GT	GGG
(AGA)	 AG	738-758	GT	GGG
(AGG)	 AG	784-795	GT	GGG
(AGG)	 AG	826-834	GT	GGG
(GAG)	 AG	859-924	GT	GGG
(GCA)	 AG	945-972	GC	GAG
-recovered GeneMark_model.110141_t, terminal, 945, 972
-recovered GeneMark_model.110141_t, internal, 453, 501
-recovered GeneMark_model.110141_t, internal, 661, 669
-recovered GeneMark_model.110141_t, internal, 694, 708
-recovered GeneMark_model.110141_t, internal, 738, 758
-recovered GeneMark_model.110141_t, internal, 784, 795
-recovered GeneMark_model.110141_t, internal, 826, 834
-recovered GeneMark_model.110141_t, internal, 859, 924
-recovered GeneMark_model.110141_t, internal, 945, 972
Couldn't classify 626, 818
Sorry, prediction snap_scaffold_2220-snap.1-T1 fails validation.
(AAC)	 AG	626-818	GT	GGG
-recovered snap_scaffold_2220-snap.1-T1, internal, 626, 818

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1463
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support