-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_222

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40921.t1
Valid prediction for GeneMark_model.106984_t
Valid prediction for GeneMark_model.106982_t
Valid prediction for GeneMark_model.106985_t
Couldn't classify 452, 523
Sorry, prediction GeneMark_model.106981_t fails validation.
(GAG)	 AG	452-523	GT	GGG
(CGA)	 AG	580-637	TG	GAT
-recovered GeneMark_model.106981_t, terminal, 580, 637
-recovered GeneMark_model.106981_t, internal, 452, 523

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40922.t1
Couldn't classify 8976, 9130
Sorry, prediction snap_scaffold_222-snap.1-T1 fails validation.
(ATG)	 AC	829-874	GT	GCG
(GTG)	 AG	1065-1150	GT	ATG
(CAG)	 AG	2558-2748	GT	GGG
(ACA)	 AG	3835-3978	GT	AGG
(TTC)	 AG	6848-6940	GT	CAG
(GCG)	 AG	7558-7639	GT	AGG
(GGC)	 AG	8052-8221	GT	GGG
(GAT)	 AG	8287-8591	GT	CAG
(GGG)	 AG	8976-9130	GT	GAG
-recovered snap_scaffold_222-snap.1-T1, initial, 829, 874
-recovered snap_scaffold_222-snap.1-T1, internal, 1065, 1150
-recovered snap_scaffold_222-snap.1-T1, internal, 2558, 2748
-recovered snap_scaffold_222-snap.1-T1, internal, 3835, 3978
-recovered snap_scaffold_222-snap.1-T1, internal, 6848, 6940
-recovered snap_scaffold_222-snap.1-T1, internal, 7558, 7639
-recovered snap_scaffold_222-snap.1-T1, internal, 8052, 8221
-recovered snap_scaffold_222-snap.1-T1, internal, 8287, 8591
-recovered snap_scaffold_222-snap.1-T1, internal, 8976, 9130
Couldn't classify 2558, 2748
Sorry, prediction GlimmerHMM_glimmerT_61532-T1 fails validation.
(CAG)	 AG	2558-2748	GT	GGG
(ACA)	 AG	3835-3978	GT	AGG
(GAC)	 AG	6538-6613	GT	AGG
(TGG)	 AG	6721-6855	GT	CAG
(GGC)	 AG	8052-8221	GT	GGG
(GAT)	 AG	8287-8605	AC	AAA
-recovered GlimmerHMM_glimmerT_61532-T1, terminal, 8287, 8605
-recovered GlimmerHMM_glimmerT_61532-T1, internal, 2558, 2748
-recovered GlimmerHMM_glimmerT_61532-T1, internal, 3835, 3978
-recovered GlimmerHMM_glimmerT_61532-T1, internal, 6538, 6613
-recovered GlimmerHMM_glimmerT_61532-T1, internal, 6721, 6855
-recovered GlimmerHMM_glimmerT_61532-T1, internal, 8052, 8221
Valid prediction for GeneMark_model.106983_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9405
-exon list size: 49


building trellis

2.0    
3.9    
5.9    
7.8    
9.8    
11.8    
13.7    
15.7    
17.6    
19.6    
21.6    
23.5    
25.5    
27.5    
29.4    
31.4    
33.3    
35.3    
37.3    
39.2    
41.2    
43.1    
45.1    
47.1    
49.0    
51.0    
52.9    
54.9    
56.9    
58.8    
60.8    
62.7    
64.7    
66.7    
68.6    
70.6    
72.5    
74.5    
76.5    
78.4    
80.4    
82.4    
84.3    
86.3    
88.2    
90.2    
92.2    
94.1    
96.1    
98.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support