-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2219

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 402, 591
Sorry, prediction Augustus_model.g41998.t1 fails validation.
(GCA)	 AG	402-591	GT	AGG
(ATT)	 AG	887-891	TA	AAT
-recovered Augustus_model.g41998.t1, terminal, 887, 891
-recovered Augustus_model.g41998.t1, internal, 402, 591
Couldn't classify 402, 591
Sorry, prediction snap_scaffold_2219-snap.1-T1 fails validation.
(GCA)	 AG	402-591	GT	AGG
-recovered snap_scaffold_2219-snap.1-T1, internal, 402, 591

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.110140_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1463
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support