-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2216

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 43, 69
Sorry, prediction GeneMark_model.110137_t fails validation.
(AAA)	 AG	43-69	GT	AAG
(GAG)	 AG	210-516	TG	AAT
-recovered GeneMark_model.110137_t, terminal, 210, 516
-recovered GeneMark_model.110137_t, internal, 43, 69

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 96, 180
Sorry, prediction GeneMark_model.110138_t fails validation.
(CCT)	 AG	96-180	GT	AGG
(CCC)	 AG	380-428	GT	CCG
(AGA)	 AG	540-545	GT	GTG
(AGA)	 AG	571-752	GT	GAG
(CGG)	 AG	854-885	AC	AAA
-recovered GeneMark_model.110138_t, terminal, 854, 885
-recovered GeneMark_model.110138_t, internal, 96, 180
-recovered GeneMark_model.110138_t, internal, 380, 428
-recovered GeneMark_model.110138_t, internal, 540, 545
-recovered GeneMark_model.110138_t, internal, 571, 752

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1465
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support